Beta Diversity

PCoA

Principal Coordinate Analysis for beta diversity visualization. Explore microbiome community dissimilarities and ecological distances in hibernating species.

Key Features

Distance matrix input

Bray-Curtis, UniFrac, Jaccard support

2D/3D scatter

Flexible dimension selection

PERMANOVA

Statistical group separation testing

Adonis R2

Variance partitioning display

Color Palette

Analysis Tip

Upload your gene expression matrix or analysis results in CSV/TSV format. The tool will automatically generate a publication-quality pcoa figure ready for your hibernation omics manuscript.

Data Input

Upload Data

Drop Expression Matrix (data.txt)

Gene rows x Sample columns, tab-separated

Drop Group File (class.txt)

Sample | Group, tab-separated, no rownames

Or paste expression matrix

Requires both expression matrix and group file

Parameters

Clustering Method

Distance Metric

Scale

Color Scheme

PCoA Visualization

Upload data and click "Generate PCoA" to visualize

Example Output

Input: Expression matrix (genes x samples)

Input Format

Gene expression matrix with genes as rows and samples as columns. Supports CSV, TSV, and tab-delimited text files.

Output: Clustered heatmap with dendrograms

Output Features

Hierarchical clustering dendrograms, color scale legend, gene/sample labels, and annotation tracks for group metadata.