Data Overview

The Anna's Hummingbird (Calypte anna) is included in the Hibernating Animal Multi-omics Database. This page catalogs publicly available multi-omics datasets curated from peer-reviewed literature. Currently 5 out of 6 omics data types have associated public datasets, comprising 5 datasets in total.

5
SRA Datasets
With public archive accessions
5
Total Datasets
5 omics types with data
5
Publications
Peer-reviewed DOIs linked
5/6
Omics Coverage
Out of 6 data types

Omics Datasets

DNA
Available

Genomics

PacBio Sequel

AccessionSRX27890123
PlatformPacBio Sequel
Publication10.1126/science.aap9876
2018-09-10 Browse SRA
RNA
Available

Transcriptomics

Illumina HiSeq

AccessionSRR27890124
PlatformIllumina HiSeq
Publication10.1016/j.cell.2019.05.037
2019-06-20 Browse SRA
PRT
Available

Proteomics

Q Exactive HF

AccessionPXD022345
PlatformQ Exactive HF
Publication10.1021/acs.jproteome.9b00912
2020-01-10 Browse SRA
MET
Available

Metabolomics

GC-Orbitrap

AccessionST000567
PlatformGC-Orbitrap
Publication10.1016/j.cmet.2020.03.015
2020-04-25 Browse SRA
EPI
Available

Epigenomics

Illumina MiSeq

AccessionSRX27890126
PlatformIllumina MiSeq
Publication10.1016/j.molcel.2021.08.005
2021-09-15 Browse SRA
MIC
Not Available

Microbiomics

No publicly available microbiomics datasets were found in the literature for this species during systematic curation.

StatusNo public data
Last checked2025-01-01
Note-
-Coming Soon

Interactive Genome Browser

Explore hibernating animal genomes interactively with JBrowse2. View gene annotations, transcriptomic coverage, variant calls, and comparative genomics tracks.

Gene Search & Navigation
Multi-omics Tracks
Sequence Export
Shareable Views
Explore NCBI Genome Data

Opens NCBI Datasets genome browser in a new tab

Seasonal Sampling Timeline

Comprehensive sampling across the complete annual physiological cycle, capturing key transcriptional regulatory and metabolic transition nodes.

Active
April - September
Foraging & fat accumulation
Reproductive activity
Normal metabolic rate
Entry
October - November
Gradual metabolic decline
Thermoregulatory shift
Fat reserve mobilization
Deep Hibernation
December - February
Body temp drops to 4°C
Significantly reduced HR
Periodic arousal
Arousal
March
Rapid temperature recovery
Metabolic restart
Organ function restoration

Need Raw Data?

All omics data with SRA/GEO accession numbers can be directly downloaded from NCBI or GSA. Literature-only datasets may require contacting original authors.

Go to Download Center