Data Overview

The Brown Bear (Ursus arctos) is included in the Hibernomics Database. This page catalogs publicly available multi-omics datasets curated from peer-reviewed literature. Currently 5 out of 6 omics data types have associated public datasets, comprising 8 datasets in total.

7
SRA Datasets
With public archive accessions
8
Total Datasets
5 omics types with data
5
Publications
Peer-reviewed DOIs linked
5/6
Omics Coverage
Out of 6 data types

Omics Datasets

DNA
Available

Genomics

Illumina/PacBio

AccessionPRJNA807323
PlatformIllumina/PacBio
RNA
Available

Transcriptomics

PacBio Iso-Seq + Illumina

AccessionPRJNA1194020
PlatformPacBio Iso-Seq + Illumina
Dataset 2PRJNA835146
Platform 2Illumina HiSeq 2500 (13 tissues)
PRT
Available

Proteomics

Q Exactive (LC-MS/MS)

AccessionPXD003946
PlatformQ Exactive (LC-MS/MS)
Dataset 2PXD030482
Platform 2Orbitrap Exploris (plasma)
MET
Available

Metabolomics

Targeted MS (carnitines, PC, amino acids)

AccessionPXD003946
PlatformTargeted MS (carnitines, PC, amino acids)
EPI
Available

Epigenomics

Illumina

AccessionPRJNA1104803
PlatformIllumina
MIC
Literature

Microbiomics

MiSeq (16S rRNA, V3-V4)

StatusLiterature only
PlatformMiSeq (16S rRNA, V3-V4)

Seasonal Sampling Timeline

Comprehensive sampling across the complete annual physiological cycle, capturing key transcriptional regulatory and metabolic transition nodes.

Active
April - September
Foraging & fat accumulation
Reproductive activity
Normal metabolic rate
Entry
October - November
Gradual metabolic decline
Thermoregulatory shift
Fat reserve mobilization
Deep Hibernation
December - February
Body temp drops to 4°C
Significantly reduced HR
Periodic arousal
Arousal
March
Rapid temperature recovery
Metabolic restart
Organ function restoration

Need Raw Data?

All omics data with SRA/GEO accession numbers can be directly downloaded from NCBI or GSA. Literature-only datasets may require contacting original authors.

Go to Download Center