Sequence Read Archive (SRA) Database

Multi-omics Raw Sequencing Data Repository

Access and download raw sequencing data from NCBI SRA for 59 hibernating species.
Covering six major omics types: genomics, transcriptomics, epigenomics, proteomics, metabolomics, and microbiomics.

Popular searches: U. americanus | U. parryii | R. ferrumequinum | M. lucifugus

330

SRA Runs

0

Species

6

Data Types

173

Publications

Browse by Omics Type

Explore raw sequencing data across six major data types. Select a data type in the table below to view specific SRA entries.

Genomics (DNA)

0 SRA runs

Whole genome sequencing, resequencing, and population genomics data

WGS WES Resequencing

Transcriptomics (RNA)

0 SRA runs

Bulk RNA-seq, single-cell RNA-seq, and isoform sequencing

RNA-seq scRNA-seq Iso-seq

Epigenomics (EPT)

0 SRA runs

DNA methylation, histone modifications, and chromatin accessibility

ChIP-seq ATAC-seq BS-seq

Proteomics (PRT)

0 SRA runs

Mass spectrometry-based proteomics and protein modification data

LC-MS/MS DIA PTM

Metabolomics (MET)

0 SRA runs

LC-MS and GC-MS based metabolite profiling during hibernation

LC-MS GC-MS NMR

Microbiomics (MIC)

0 SRA runs

16S rRNA, metagenomics, and microbiome profiling from host-associated samples

16S Metagenome Shotgun

Species Data Matrix

Taxonomy Click to expand full lineage	Data Type	SRA ID External Link	Reference	Platform	Date	Detail
🐻 Mammalia Mammalia › › › Order Monotremata Family Tachyglossidae Genus Tachyglossus T. aculeatus Order Diprotodontia Family Burramyidae Genus Cercartetus C. nanus Order Rodentia Family Cricetidae Genus Mesocricetus M. auratus Family Sciuridae Genus Ictidomys I. tridecemlineatus Genus Marmota M. himalayana M. monax Genus Tamias T. asiaticus T. sibiricus Genus Urocitellus U. parryii Genus Spermophilus S. citellus S. beecheyi S. dauricus S. lateralis Family Gliridae Genus Eliomys E. quercinus Genus Dryomys D. nitedula Genus Muscardinus M. avellanarius Genus Glis G. glis Family Dipodidae Genus Jaculus J. orientalis Order Primates Family Lorisidae Genus Nycticebus N. pygmaeus Family Cheirogaleidae Genus Cheirogaleus C. medius Genus Microcebus M. murinus Order Eulipotyphla Family Erinaceidae Genus Erinaceus E. europaeus Order Chiroptera Family Rhinolophidae Genus Rhinolophus R. ferrumequinum Family Vespertilionidae Genus Nyctalus N. noctula Genus Eptesicus E. fuscus Genus Myotis M. lucifugus Order Afrosoricida Family Tenrecidae Genus Echinops E. telfairi Order Carnivora Family Ursidae Genus Ursus U. thibetanus U. maritimus U. arctos U. americanus Click on Mammalia to select a species		-	-	-	-	-
🐸 Amphibia Amphibia › › › Order Anura Family Dicroglossidae Genus Fejervarya F. multistriata Family Ranidae Genus Pelophylax P. nigromaculatus Genus Nanorana N. parkeri Genus Rana R. dybowskii Family Bufonidae Genus Bufotes B. pewzowi Genus Bufo B. gargarizans B. raddei Family Hylidae Genus Lithobates L. sylvaticus Order Caudata Family Cryptobranchidae Genus Andrias A. davidianus Click on Amphibia to select a species		-	-	-	-	-
🐍 Reptilia Reptilia › › Order Squamata Family Lacertidae Genus Lacerta L. agilis Genus Eremias E. multiocellata Family Colubridae Genus Natrix N. natrix Genus Euprepiophis E. mandarinus Genus Elaphe E. carinata Genus Ptyas P. mucosus Family Viperidae Genus Gloydius G. brevicaudus Family Iguanidae Genus P. spp. P. spp. Order Crocodilia Family Alligatoridae Genus Alligator A. sinensis Order Testudines Family Geoemydidae Genus Mauremys M. reevesii Family Emydidae Genus Terrapene T. carolina Family Testudinidae Genus Testudo T. hermanni Click on Reptilia to select a species		-	-	-	-	-
🐦 Aves Aves › › Order Caprimulgiformes Family Caprimulgidae Genus Caprimulgus C. europaeus Genus Phalaenoptilus P. nuttallii Order Apodiformes Family Trochilidae Genus Campylopterus C. hemileucurus Genus Calypte C. anna Click on Aves to select a species		-	-	-	-	-
🦋 Insecta Insecta › › › Order Coleoptera Family Coccinellidae Genus Coccinella C. septempunctata Order Lepidoptera Family Crambidae Genus Chilo C. partellus Click on Insecta to select a species		-	-	-	-	-
🐌 Gastropoda Gastropoda › › › Order Stylommatophora Family Helicidae Genus Helix H. aspersa Click on Gastropoda to select a species		-	-	-	-	-

Analysis Workflows

8 integrated analysis pipelines covering BLAST annotation, differential expression, single-cell analysis, spatial transcriptomics, genome assembly, epigenomics, proteomics, and multi-omics integration.

BLAST & Sequence Annotation

Sequence alignment, functional annotation, and phylogenetic tree construction

Bulk RNA-seq

Differential expression analysis, pathway enrichment, and volcano visualization

Single-Cell RNA-seq

Cell clustering, marker identification, and trajectory inference

Spatial Transcriptomics

H&E image registration, spot clustering, and spatial gene expression

Genome Assembly & Annotation

De novo assembly, gene prediction, Circos visualization, and GWAS analysis

Epigenomics

DNA methylation, histone modification, ATAC-seq, and chromatin accessibility

Proteomics & Metabolomics

MS-based protein quantification, iTRAQ/TMT analysis, and metabolite profiling

Microbiome Analysis

16S rRNA profiling, metagenomic assembly, alpha/beta diversity, and PCoA

Multi-Omics Integration

Joint PCA, WGCNA co-expression, and multi-layer correlation networks

View All Workflows

Explore all 8 analysis pipelines and their integrated plotting tools