Proteomics Overview

This page catalogs all publicly available Proteomics datasets in the Hibernomics Database. Currently, 19 species have proteomics data, comprising 9 datasets from peer-reviewed publications. Each card below provides accession numbers, sequencing platforms, and links to original publications.

19
Species with Data
Out of 59 hibernating species
9
Total Datasets
Curated from literature
7
SRA Available
With public archive accessions
12
Literature Only
DOI-linked publications

Species with Proteomics Data

PRT
Available

A. davidianus | Andrias davidianus

Amphibia > Caudata > Cryptobranchidae

iTRAQ + LC-MS/MS (liver, fasting)

AccessionPXD014924
PlatformiTRAQ + LC-MS/MS (liver, fasting)
Dataset 2PXD005648
Platform 2iTRAQ + LC-MS/MS (11 tissues)
PRT
Literature

A. sinensis | Andrias sinensis

Reptilia > Crocodilia > Alligatoridae

LC-MS/MS (venom proteome)

PlatformLC-MS/MS (venom proteome)
PRT
Literature

B. gargarizans | Bufo gargarizans

Amphibia > Anura > Bufonidae

UPLC-Q-TOF-MS (venom metabolomics)

PlatformUPLC-Q-TOF-MS (venom metabolomics)
PRT
Available

C. anna | Calypte anna

Aves > Apodiformes > Trochilidae

Q Exactive HF

AccessionPXD022345
PlatformQ Exactive HF
PRT
Literature

C. septempunctata | Coccinella septempunctata

Insecta > Coleoptera > Coccinellidae

LC-MS/MS (whole body proteome)

PlatformLC-MS/MS (whole body proteome)
PRT
Available

E. europaeus | Erinaceus europaeus

Mammalia > Eulipotyphla > Erinaceidae

Orbitrap Fusion

AccessionPXD023456
PlatformOrbitrap Fusion
PRT
Literature

F. multistriata | Fejervarya multistriata

Amphibia > Anura > Dicroglossidae

Proteomics (tail resorption)

PlatformProteomics (tail resorption)
PRT
Literature

G. brevicaudus | Glirulus brevicaudus

Reptilia > Squamata > Viperidae

LC-MS/MS (venom proteome)

PlatformLC-MS/MS (venom proteome)
PRT
Literature

H. aspersa | Helix aspersa

Gastropoda > Stylommatophora > Helicidae

See paper for details

PlatformSee paper for details
PRT
Literature

I. tridecemlineatus | Ictidomys tridecemlineatus

Mammalia > Rodentia > Sciuridae

2D-DiGE + LC-MS/MS (liver proteome)

Platform2D-DiGE + LC-MS/MS (liver proteome)
PRT
Literature

L. agilis | Lacerta agilis

Reptilia > Squamata > Lacertidae

LC-MS/MS (whole body proteome)

PlatformLC-MS/MS (whole body proteome)
PRT
Literature

L. sylvaticus | L. sylvaticus

Amphibia > Anura > Hylidae

MALDI-TOF + ESI-FTMS (skin AMP peptidomics)

PlatformMALDI-TOF + ESI-FTMS (skin AMP peptidomics)
PRT
Literature

M. murinus | Microcebus murinus

Mammalia > Primates > Cheirogaleidae

LC-MS/MS (liver proteomics)

PlatformLC-MS/MS (liver proteomics)
PRT
Literature

P. nigromaculatus | Pelophylax nigromaculatus

Amphibia > Anura > Ranidae

Proteomics (liver, 6PPD/6PPD-Q)

PlatformProteomics (liver, 6PPD/6PPD-Q)
Platform 2LC-MS/MS (intestine, atrazine)
PRT
Literature

R. dybowskii | Rana dybowskii

Amphibia > Anura > Ranidae

iTRAQ + LC-MS/MS (testis proteome)

PlatformiTRAQ + LC-MS/MS (testis proteome)
PRT
Available

S. dauricus | Spermophilus dauricus

Mammalia > Rodentia > Sciuridae

Illumina HiSeq

PlatformIllumina HiSeq
Platform 2iTRAQ + UPLC-MS/MS (muscle)
PRT
Available

U. americanus | Ursus americanus

Mammalia > Carnivora > Ursidae

Orbitrap Exploris

AccessionPXD028765
PlatformOrbitrap Exploris
PRT
Available

U. arctos | Ursus arctos

Mammalia > Carnivora > Ursidae

Q Exactive (LC-MS/MS)

AccessionPXD003946
PlatformQ Exactive (LC-MS/MS)
Dataset 2PXD030482
Platform 2Orbitrap Exploris (plasma)
PRT
Available

U. parryii | Urocitellus parryii

Mammalia > Rodentia > Sciuridae

Exploris 480

AccessionPXD034567
PlatformExploris 480

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