Metabolomics Overview

This page catalogs all publicly available Metabolomics datasets in the Hibernomics Database. Currently, 19 species have metabolomics data, comprising 6 datasets from peer-reviewed publications. Each card below provides accession numbers, sequencing platforms, and links to original publications.

19
Species with Data
Out of 59 hibernating species
6
Total Datasets
Curated from literature
6
SRA Available
With public archive accessions
13
Literature Only
DOI-linked publications

Species with Metabolomics Data

MET
Literature

A. davidianus | Andrias davidianus

Amphibia > Caudata > Cryptobranchidae

UPLC-Q Exactive-MS + GC-IMS (lipidomics)

PlatformUPLC-Q Exactive-MS + GC-IMS (lipidomics)
Platform 2UPLC-Q Exactive-MS + GC-IMS (liver volatiles)
MET
Literature

B. gargarizans | Bufo gargarizans

Amphibia > Anura > Bufonidae

GC-MS (bile acid metabolism)

PlatformGC-MS (bile acid metabolism)
Platform 2GC-MS (lipid metabolism, Cd exposure)
MET
Available

C. anna | Calypte anna

Aves > Apodiformes > Trochilidae

GC-Orbitrap

AccessionST000567
PlatformGC-Orbitrap
MET
Available

E. europaeus | Erinaceus europaeus

Mammalia > Eulipotyphla > Erinaceidae

LC-QTOF

AccessionST001567
PlatformLC-QTOF
MET
Literature

F. multistriata | Fejervarya multistriata

Amphibia > Anura > Dicroglossidae

Metabolomics (tail resorption)

PlatformMetabolomics (tail resorption)
Platform 2LC-MS/MS (bile acid profiles, tadpoles)
MET
Literature

G. brevicaudus | Glirulus brevicaudus

Reptilia > Squamata > Viperidae

NMR + LC-MS (skin metabolome)

PlatformNMR + LC-MS (skin metabolome)
MET
Literature

I. tridecemlineatus | Ictidomys tridecemlineatus

Mammalia > Rodentia > Sciuridae

LC-MS (liver metabolomics)

PlatformLC-MS (liver metabolomics)
MET
Literature

M. murinus | Microcebus murinus

Mammalia > Primates > Cheirogaleidae

Metabolic profiling (winter fattening)

PlatformMetabolic profiling (winter fattening)
MET
Literature

N. parkeri | Nanorana parkeri

Amphibia > Anura > Ranidae

GC-MS (liver metabolome, hibernation)

PlatformGC-MS (liver metabolome, hibernation)
MET
Literature

P. mucosus | Ptyas mucosus

Reptilia > Squamata > Colubridae

NMR + LC-MS (skin metabolome)

PlatformNMR + LC-MS (skin metabolome)
MET
Literature

P. nigromaculatus | Pelophylax nigromaculatus

Amphibia > Anura > Ranidae

LC-MS/MS (continuous/pulse atrazine)

PlatformLC-MS/MS (continuous/pulse atrazine)
Platform 2LC-MS/MS (145 metabolites, atrazine)
MET
Literature

R. dybowskii | Rana dybowskii

Amphibia > Anura > Ranidae

GC-MS (tadpole metabolomics, nitrate exposure)

PlatformGC-MS (tadpole metabolomics, nitrate exposure)
MET
Literature

R. ferrumequinum | Rhinolophus ferrumequinum

Mammalia > Chiroptera > Rhinolophidae

LC-MS (metabolome)

PlatformLC-MS (metabolome)
MET
Literature

S. beecheyi | Spermophilus beecheyi

Mammalia > Rodentia > Sciuridae

LC-MS (metabolome)

PlatformLC-MS (metabolome)
MET
Literature

S. dauricus | Spermophilus dauricus

Mammalia > Rodentia > Sciuridae

UPLC-MS/MS (muscle metabolomics)

PlatformUPLC-MS/MS (muscle metabolomics)
Platform 2Metabolic profiling (serum/lipids)
MET
Available

T. sibiricus | Tamias sibiricus

Mammalia > Rodentia > Sciuridae

LC-MS/MS

AccessionMSV000100661
PlatformLC-MS/MS
MET
Available

U. americanus | Ursus americanus

Mammalia > Carnivora > Ursidae

GC-Orbitrap

AccessionST000456
PlatformGC-Orbitrap
MET
Available

U. arctos | Ursus arctos

Mammalia > Carnivora > Ursidae

Targeted MS (carnitines, PC, amino acids)

AccessionPXD003946
PlatformTargeted MS (carnitines, PC, amino acids)
MET
Available

U. parryii | Urocitellus parryii

Mammalia > Rodentia > Sciuridae

LC-QTOF

AccessionST000987
PlatformLC-QTOF

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